Thursday, August 7, 2008
can you provide an example script for the integrated system for studying residue coevolution in proteins?
Regarding the integrated system for studying residue coevolution in proteins, can you provide an example script that can take one input file in command-line and write result to an output file? Also, can you send me those matlab code for SCA implementation?
The system was implemented in Java. It requires the Java virtual machine, plus some additional packages in order to run locally. If you are interested in installing it on your own machine, I can help sort out the steps. The Matlab code for SCA is unfortunately licensed and we cannot redistribute it. You may contact Rama Ranganathan for it. I think they are also releasing a newer version of SCA.