I would like to use the NucProt Calculator for an RNA/protein mix, more exactly the genome of a virus plus several copies of its viral enzymes. I am not sure how I should input things in the program. Shall I introduce the sequence of the viral genome followed by those of the viral proteins?
The NucProt Packing-Eff calculator works on PDB structures NOT sequences, so they cannot mean that:
http://www.molmovdb.org/cgi-bin/voronoi.cgi
The NucProt PSV and Volume Calculator:
http://www.molmovdb.org/cgi-bin/psv.cgi
is not the best written CGI code that can take several sequences at once, but since I didn't understand HTTP GET and POST very well, I had it put all in the information in the GET rather than the POST, so there is a browser limit. I don't think I have write access anymore to this file.
Technically it can take several sequence in FASTA format though.
6 comments:
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